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Hippocampal Trait GWAS Lead to Associations Across, Within Ancestry Groups

In Nature Genetics, members of the Chinese Imaging Genetics (CHIMGEN) consortium present findings from genome-wide association analyses and cross-ancestry GWAS meta-analyses centered on the volume of the brain's hippocampus and hippocampal subfield. Using array-based genotyping profiles for nearly 65,800 individuals with available hippocampal volume measurements and 38,977 individuals with subfield volume data, the researchers narrowed in on more than 300 variants associated with the 44 hippocampal traits considered. The variant association set encompassed almost two dozen associations not reported in the past, they note, and included an overrepresentation of variants falling in Wnt signaling and neuron differentiation pathways as well as variants implicated in processes such as cognition and neuropsychiatric disease risk. "Despite most of the identified genetic associations with hippocampal volumetric traits being shared by ancestries, we also found 5.71 [percent] ancestry-specific genetic associations," the authors report, "which may account for the inter-ancestry discrepancy in hippocampus-related phenotypes."

The Scan

Cystatin C Plays Role in Immunosuppression, Cancer Immunotherapy Failure, Study Finds

A study in Cell Genomics provides insight into how glucocorticoids can lead to cancer immunotherapy failure via cystatin C production.

Aging, Species Lifespan Gene Expression Signatures Overlap

An Osaka Metropolitan University team reports in Nucleic Acids Research that transcriptional signatures of aging and maximum lifespan have similarities.

Splicing Subgroup Provides Protocols for Evaluating Splicing Variant Data

The group presents their approach on how to apply evidence codes to splicing predictions and other data in the American Journal of Human Genetics.

Single-Cell Transcriptomic Atlas of Mouse Cochlea to Aid Treatment Development

Researchers in PNAS conducted single-cell and single-nuclear sequencing of about 120,000 cells at three key timepoints in cochlear development to generate a transcriptomic atlas.